Berndt Muller

2024

A nematode-specific ribonucleoprotein complex mediates interactions between the major nematode spliced leader snRNP and its target pre-mRNAs

Eijlers, P., Al-Khafaji, M. I., Soto Martin, E., Fasimoye, R. Y., Stead, D., Wenzel, M. (Corresponding Author), Muller, B. (Corresponding Author) & Pettitt, J. (Corresponding Author), 8 Jul 2024, In: Nucleic Acids Research. 52, 12, p. 7245-7260 16 p., gkae321.

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2022

CMTr mediated 2`-O-ribose methylation status of cap adjacent-nucleotides across animals

Dix, T. C., Haussmann , I. U., Brivio, S., Nallasivan, M. P., Hadzhiev, Y., Müller, F., Müller, B. M., Pettitt, J. & Soller, M. (Corresponding Author), 1 Oct 2022, In: RNA . 28, 10, p. 1377-1390 15 p.

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6 Citations (Scopus)

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A novel, essential trans-splicing protein connects the nematode SL1 snRNP to the CBC-ARS2 complex

Fasimoye, R. Y., Spencer, R. E., Soto Martin, E., Eijlers, P., Elmassoudi, H., Brivio, S., Mangana, C., Sabele, V., Rechtorikova, R., Wenzel, M., Connolly, B., Pettitt, J. (Corresponding Author) & Müller, B. M. (Corresponding Author), 22 Jul 2022, In: Nucleic Acids Research. 50, 13, p. 7591-7607 17 p.

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3 Citations (Scopus)

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2021

SLIDR and SLOPPR: flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data

Wenzel, M. (Corresponding Author), Muller, B. & Pettitt, J., 22 Mar 2021, In: BMC Bioinformatics. 22, 30 p., 140.

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4 Citations (Scopus)

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2020

Resolution of polycistronic RNA by SL2 trans-splicing is a widely-conserved nematode trait

Wenzel, M., Johnston, C. S., Müller, B. M., Pettitt, J. & Connolly, B., Dec 2020, In: RNA . 26, 12, p. 1891-1904 14 p.

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Open Access

2 Citations (Scopus)

Deep evolutionary origin of nematode SL2 trans-splicing revealed by genome-wide analysis of the Trichinella spiralis transcriptome

Wenzel, M., Johnston, C., Müller, B., Pettitt, J. (Corresponding Author) & Connolly, B., 2020, In: bioRxiv.

Research output: Contribution to journal › Article

Open Access

2019

A Bioluminescence Reporter Assay for Retinoic Acid Control of Translation of the GluR1 Subunit of the AMPA Glutamate Receptor

Khatib, T., Whiting, A., Chisholm, D. R., Redfern, C., Muller, B. & McCaffery, P. (Corresponding Author), Oct 2019, In: Molecular Neurobiology. 56, 10, p. 7074-7084 11 p.

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3 Citations (Scopus)

52 Downloads (Pure)

A high-throughput screen for the identification of compounds that inhibit nematode gene expression by targeting spliced leader trans-splicing

Pandarakalam, G. C., Speake, M., McElroy, S., Alturkistani, A., Philippe, L., Pettitt, J., Muller, B. (Corresponding Author) & Connolly, B., Aug 2019, In: International Journal for Parasitology: Drugs and Drug Resistance. 10, p. 28-37 10 p.

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7 Citations (Scopus)

18 Downloads (Pure)

2017

An in vivo genetic screen for genes involved in spliced leader trans-splicing indicates a crucial role for continuous de novo spliced leader RNP assembly

Philippe, L., Pandarakalam, G. C., Fasimoye, R., Harrison, N., Connolly, B., Pettitt, J. & Muller, B. (Corresponding Author), 21 Aug 2017, In: Nucleic Acids Research. 45, 14, p. 8474-8483 10 p.

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10 Citations (Scopus)

14 Downloads (Pure)

2016

Modelling Robust Feedback Control Mechanisms That Ensure Reliable Coordination of Histone Gene Expression with DNA Replication

Christopher, A., Hameister, H., Corrigall, H., Ebenhoeh, O., Muller, B. & Ullner, E. (Corresponding Author), 31 Oct 2016, In: PloS ONE. 11, 10, 20 p., e0165848.

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2 Citations (Scopus)

11 Downloads (Pure)

2015

Mutation of genes controlling mRNA metabolism and protein synthesis predisposes to neurodevelopmental disorders

Sartor, F., Anderson, J., McCaig, C., Miedzybrodzka, Z. & Müller, B., 1 Dec 2015, In: Biochemical Society Transactions. 43, 6, p. 1259-1265 7 p.

Research output: Contribution to journal › Article › peer-review

13 Citations (Scopus)

Full UPF3B function is critical for neuronal differentiation of neural stem cells

Alrahbeni, T., Sartor, F., Anderson, J., Miedzybrodzka, Z., McCaig, C. & Muller, B. (Corresponding Author), 27 May 2015, In: Molecular brain. 8, 15 p., 33.

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49 Citations (Scopus)

13 Downloads (Pure)

2014

Operons Are a Conserved Feature of Nematode Genomes

Pettitt, J., Philippe, L., Sarkar, D., Johnston, C., Gothe, H., Massie, D., Connolly, B. & Muller, B., Aug 2014, In: Genetics. 197, 4, p. 1201-1211 11 p.

Research output: Contribution to journal › Article › peer-review

17 Citations (Scopus)

2013

Replication stress-induced alternative mRNA splicing alters properties of the histone RNA-binding protein HBP/SLBP: a key factor in the control of histone gene expression

Rattray, A. M. J., Nicholson, P. & Muller, B., 13 Aug 2013, In: Bioscience Reports. 33, 5, e00066.

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1 Citation (Scopus)

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2010

SL2-like spliced leader RNAs in the basal nematode Prionchulus punctatus: new insight into the evolution of nematode SL2 RNAs

Harrison, N., Kalbfleisch, A., Connolly, B., Pettitt, J. & Muller, B., Aug 2010, In: RNA . 16, 8, p. 1500-1507 8 p.

Research output: Contribution to journal › Article › peer-review

9 Citations (Scopus)

The evolution of spliced leader trans-splicing in nematodes

Pettitt, J., Harrison, N., Stansfield, I., Connolly, B. & Müller, B., Aug 2010, In: Biochemical Society Transactions. 38, 4, p. 1125-1130 6 p.

Research output: Contribution to journal › Article › peer-review

13 Citations (Scopus)

2009

Deregulation of EIF4E: a novel mechanism for autism

Neves-Pereira, M., Muller, B., Massie, D., Williams, J. H. G., O'Brien, P. C. M., Hughes, A., Shen, S.-B., St Clair, D. & Miedzybrodzka, Z., Nov 2009, In: Journal of Medical Genetics. 46, 11, p. 759-765 7 p.

Research output: Contribution to journal › Article › peer-review

108 Citations (Scopus)

2008

Post-transcriptional control of animal histone gene expression: not so different after all...

Nicholson, P. & Muller, B. M., 2008, In: Molecular BioSystems. 4, 7, p. 721-725 5 p.

Research output: Contribution to journal › Article › peer-review

7 Citations (Scopus)

Spliced leader trans-splicing in the nematode Trichinella spiralis uses highly polymorphic, noncanonical spliced leaders

Pettitt, J., Muller, B. M., Stansfield, I. & Connolly, B., 2008, In: RNA . 14, 4, p. 760-770 11 p.

Research output: Contribution to journal › Article › peer-review

24 Citations (Scopus)

2007

DNA-activated protein kinase functions in a newly observed S phase checkpoint that links histone mRNA abundance with DNA replication

Muller, B. M., Blackburn, J., Feijoo, C., Zhao, X. & Smythe, C., 24 Dec 2007, In: Journal of Cell Biology. 179, 7, p. 1385-1398 14 p.

Research output: Contribution to journal › Article › peer-review

34 Citations (Web of Science)

Histone gene expression and histone mRNA 3' end structure in Caenorhabditis elegans

Keall, R., Whitelaw, S., Pettitt, J. & Muller, B., 14 Jun 2007, In: BMC Molecular Biology. 8, 12 p., 51.

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21 Citations (Scopus)

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2005

The stem-loop binding protein stimulates histone translation at an early step in the initiation pathway

Gorgoni, B., Andrews, S. C., Schaller, A., Schümperli, D., Gray, K. & Muller, B. M., Jul 2005, In: RNA . 11, 7, p. 1030-1042 12 p.

Research output: Contribution to journal › Article › peer-review

55 Citations (Scopus)

2004

The human histone gene expression regulator HBP/SLBP is required for histone and DNA synthesis, cell cycle progression and cell proliferation in mitotic cells

Zhao, X., McKillop-Smith, S. & Muller, B. M., 1 Dec 2004, In: Journal of Cell Science. 117, 25, p. 6043-6051 9 p.

Research output: Contribution to journal › Article › peer-review

60 Citations (Scopus)

2002

The Caenorhabditis elegans histone hairpin-binding protein is required for core histone gene expression and is essential for embryonic and postembryonic cell division

Pettitt, J., Crombie, C., Schümperli, D. & Muller, B. M., 15 Feb 2002, In: Journal of Cell Science. 115, 4, p. 857-866 10 p.

Research output: Contribution to journal › Article › peer-review

49 Citations (Scopus)

Structure of the histone mRNA hairpin required for cell cycle regulation of histone gene expression

Zanier, K., Crombie, C., Muller, B. M., Schümperli, D., Linge, J. P., Nilges, M., Sattler, M. & Luyten, I., 2002, In: RNA . 8, 1, p. 29-46 17 p.

Research output: Contribution to journal › Article › peer-review

38 Citations (Scopus)

2001

Purified U7 snRNPs lack the Sm proteins D1 and D2 but contain Lsm10, a new 14 kDa Sm D1-like protein

Pillai, R. S., Will, C. L., Lührmann, R., Schümperli, D. & Muller, B. M., Oct 2001, In: EMBO Journal. 20, 19, p. 5470-5479 9 p.

Research output: Contribution to journal › Article › peer-review

137 Citations (Scopus)

2000

Assembly of U7 small nuclear ribonucleoprotein particle and histone RNA 3 ' processing in Xenopus egg extracts

Muller, B., Link, J. & Smythe, C., 11 Aug 2000, In: The Journal of Biological Chemistry. 275, 32, p. 24284-24293 10 p.

Research output: Contribution to journal › Article › peer-review

12 Citations (Scopus)

Positive and negative mutant selection in the human histone hairpin-binding protein using the yeast three-hybrid system

Martin, F., Michel, F., Zenklusen, D., Muller, B. M. & Schumperli, D., 1 Apr 2000, In: Nucleic Acids Research. 28, 7, p. 1594-1603 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

30 Citations (Scopus)

Specificities of Caenorhabditis elegans and human hairpin binding proteins for the first nucleotide in the histone mRNA hairpin loop

Michel, F., Schumperli, D. & Muller, B., 2000, In: RNA . 6, 11, p. 1539-1550 12 p.

Research output: Contribution to journal › Article › peer-review

18 Citations (Scopus)

1998

A 5 '-3 ' exonuclease activity involved in forming the 3 ' products of histone pre-mRNA processing in vitro

Walther, T. N., Koning, T. H. W., Schumperli, D. & Muller, B. M., Sept 1998, In: RNA . 4, 9, p. 1034-1046 13 p.

Research output: Contribution to journal › Article › peer-review

30 Citations (Web of Science)

1997

Characterization of the calf thymus hairpin-binding factor involved in histone pre-mRNA 3' end processing

Schaller, A., Martin, F. & Muller, B. M., 18 Apr 1997, In: The Journal of Biological Chemistry. 272, 16, p. 10435-10441 7 p.

Research output: Contribution to journal › Article › peer-review

7 Citations (Scopus)

The gene for histone RNA hairpin binding protein is located on human chromosome 4 and encodes a novel type of RNA binding protein

Martin, F., Schaller, A., Eglite, S., Schümperli, D. & Muller, B. M., 17 Feb 1997, In: EMBO Journal. 16, 4, p. 769-778 10 p.

Research output: Contribution to journal › Article › peer-review

136 Citations (Scopus)

1993

Branch migration of Holliday junctions promoted by the Escherichia coli RuvA and RuvB proteins: I. Comparison of RuvAB- and RuvB-mediated reactions

Muller, B. M., TSANEVA, I. R. & WEST, S. C., 15 Aug 1993, In: The Journal of Biological Chemistry. 268, 23, p. 17179-17184 6 p.

Research output: Contribution to journal › Article › peer-review

75 Citations (Scopus)

Branch Migration of Holliday Junctions Promoted by the Escherichia coli RuvA and RuvB Proteins: 2. Interaction of RuvB with DNA

Muller, B. M., TSANEVA, I. R. & WEST, S. C., 15 Aug 1993, In: The Journal of Biological Chemistry. 268, 23, p. 17185-17189 5 p.

Research output: Contribution to journal › Article › peer-review

57 Citations (Scopus)

1992

Unusual Stability of Recombination Intermediates made by Escherichia coli RecA Protein

Muller, B. M., BURDETT, I. & WEST, S. C., Jul 1992, In: EMBO Journal. 11, 7, p. 2685-2693 9 p.

Research output: Contribution to journal › Article › peer-review

55 Citations (Web of Science)

ATP-dependent branch migration of Holliday junctions promoted by the RuvA and RuvB proteins of E. coli

Tsaneva, I. R., Muller, B. M. & West, S. C., 26 Jun 1992, In: Cell. 69, 7, p. 1171-1180 10 p.

Research output: Contribution to journal › Article › peer-review

239 Citations (Scopus)

1991

Action of RecBCD enzyme on Holliday structures made by RecA

Muller, B. M., Boehmer, P. E., Emmerson, P. T. & West, S. C., 5 Oct 1991, In: The Journal of Biological Chemistry. 266, 28, p. 19028-19033 6 p.

Research output: Contribution to journal › Article › peer-review

7 Citations (Web of Science)

RecA-mediated annealing of single-stranded DNA and its relation to the mechanism of homologous recombination

Muller, B. M. & Stasiak, A., 5 Sept 1991, In: Journal of Molecular Biology. 221, 1, p. 131-145 15 p.

Research output: Contribution to journal › Article › peer-review

18 Citations (Scopus)

1990

T7 endonuclease I resolves Holliday junctions formed in vitro by RecA protein

Muller, B. M., Jones, C. & West, S. C., 11 Oct 1990, In: Nucleic Acids Research. 18, 19, p. 5633-5636 4 p.

Research output: Contribution to journal › Article › peer-review

14 Citations (Scopus)

Characterization of the DNA binding activity of stable RecA-DNA complexes: Interaction between the two DNA binding sites within RecA helical filaments

Muller, B. M., Koller, T. & Stasiak, A., 5 Mar 1990, In: Journal of Molecular Biology. 212, 1, p. 97-112 16 p.

Research output: Contribution to journal › Article › peer-review

84 Citations (Web of Science)

Enzymatic formation and resolution of Holliday junctions in vitro

Muller, B. M., Jones, C., Kemper, B. & West, S. C., 26 Jan 1990, In: Cell. 60, 2, p. 329-336 8 p.

Research output: Contribution to journal › Article › peer-review

43 Citations (Scopus)

1987

The accessibility of DNA to dimethylsulfate in complexes with recA protein

Di Capua, E. & Muller, B. M., 1 Aug 1987, In: EMBO Journal. 6, 8, p. 2493-2498 6 p.

Research output: Contribution to journal › Article › peer-review

45 Citations (Scopus)

Berndt Muller

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