Microscopic Image Dataset of Fungal Spores for Computer Vision Applications in Tectona Grandis and Other Taxa

  • Syeda Munjiba Islam
  • , Md. Shariar Hossain Sazzad
  • , Md. Faysal Ahamed
  • , Maaz Ahmed
  • , Sadikul Islam Nayon
  • , Toufiq Islam
  • , Sabrina Saniat Ayon
  • , Julfikar Haider
  • , M. Abdullah-Al-Wadud
  • , S. M. Riazul Islam* (Corresponding Author)
  • *Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

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Abstract

Fungal diseases pose significant threats to forestry species such as Tectona grandis (teak), as well as other important forestry and agricultural crops, highlighting the need for early and accurate identification of fungal spores, which serve as primary agents of dissemination and infection. Although Artificial Intelligence (AI) has enabled automated spore recognition, its effectiveness depends on the availability of large, diverse, and well-annotated datasets. However, publicly available datasets targeting fungal taxa associated with commercially valuable timber species remain scarce. To address this gap, we introduce a microscopic image dataset of fungal spores isolated from symptomatic teak foliage, including Olivea tectonae, Colletotrichum siamense, and Neopestalotiopsis sp. The dataset was developed through systematic field sampling, direct microscopic observation, and axenic culturing, followed by high-resolution imaging and manual annotation by experts. This annotated dataset serves as a foundational resource for AI-assisted spore detection across both field-based and atmospheric surveillance workflows, supporting applications such as sample-based analysis, air-based monitoring, and real-time diagnostics. Its cross-species utility and future extensibility enhance its value for plant disease management.
Original languageEnglish
Article number2017
Number of pages14
JournalScientific Data
Volume12
Early online date11 Dec 2025
DOIs
Publication statusPublished - 29 Dec 2025

Bibliographical note

The authors acknowledge the support of AI tools (ChatGPT, QuillBot, and Grammarly) in improving the clarity and quality of this manuscript.

Data Availability Statement

The dataset33 generated and analyzed in this study, comprising images of fungal spores along with YOLO-format annotation files for object detection, is publicly available on Figshare at https://doi.org/10.6084/m9.figshare.28855910.

Code availability
All source code used for training, evaluation, and visualization is publicly available in a GitHub repository at https://github.com/MaazAhmed32/TgFC-Tectona-grandis-Fungal-Community-Dataset-Code-Validation and is released under the MIT license. The repository includes scripts for model training, result visualization using EigenCAM, and tools for dataset preparation and evaluation.

Funding

This work was supported by the Ongoing Research Funding program, (ORF-2025-951), King Saud University, Riyadh, Saudi Arabia. This work was also supported by a startup grant from the School of Natural and Computing Sciences at the University of Aberdeen, provided as part of the faculty’s funding initiatives.

FundersFunder number
King Saud UniversityORF-2025-951
University of Aberdeen

    UN SDGs

    This output contributes to the following UN Sustainable Development Goals (SDGs)

    1. SDG 9 - Industry, Innovation, and Infrastructure
      SDG 9 Industry, Innovation, and Infrastructure
    2. SDG 13 - Climate Action
      SDG 13 Climate Action
    3. SDG 15 - Life on Land
      SDG 15 Life on Land

    Keywords

    • Microscopic image dataset
    • Plant disease monitoring
    • AI-assisted diagnosis
    • Fungal spore detection
    • Tectona grandis

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