Analysis Software: Dynamic calcium-mediated stress response and recovery signatures in the fungal pathogen, Candida albicans

  • Vasile Giuraniuc (Creator)
  • Callum Parkin (Creator)
  • Mariana Cruz Almeida (Creator)
  • Mark Fricker (Creator)
  • Peyman Shadmani (Creator)
  • Sophie Nye (Creator)
  • Silvia Wehmeier (Creator)
  • Srishti Chawla (Creator)
  • Tina Bedekovic (Creator)
  • Laura Lehtovirta-Morley (Creator)
  • David Richards (Creator)
  • Neil AR Gow (University of Exeter) (Creator)
  • Alexandra C Brand (University of Exeter) (Creator)

Dataset

Description

Calcium Spike Analysis (CSA) MATLAB software developed by Prof Mark Fricker (University of Oxford) for GCaMP6 signal analysis in C. albicans. Files are in mlappinstall format, please install within MATLAB. CSA_20220420.mlappinstall - CSA analysis package CSAgraphs_20220414.mlappinstall - Spikes/ambient GCaMP activity plots package Dependencies for Software: Most recent version of MATLAB plus the following toolboxes: •’Signal Processing Toolbox’ • ’Image Processing Toolbox’ • ’Statistics and Machine Learning Toolbox’ • ’Curve Fitting Toolbox’ • ’Bioinformatics Toolbox’ • ’Computer Vision System Toolbox’ BioFormats package for importing microscopy data (http://www.openmicroscopy.org/), ensure this is in your MATLAB search path when installed The latest version of Java (http://www.java.com/en/) GhostScript: http://www.ghostscript.com/ XPDF Reader :https://www.xpdfreader.com/download.html
Date made available1 Jun 2023
PublisherZenodo

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