Ageing compromises mouse thymus function and remodels epithelial cell differentiation

Jeanette Baran-Gale, Michael D Morgan, Stefano Maio, Fatima Dhalla, Irene Calvo-Asensio, Mary E Deadman, Adam E Handel, Ashley Maynard, Steven Chen, Foad Green, Rene V Sit, Norma F Neff, Spyros Darmanis, Weilun Tan, Andy P May, John C Marioni, Chris P Ponting* (Corresponding Author), Georg A Holländer* (Corresponding Author)

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

73 Citations (Scopus)

Abstract

Ageing is characterised by cellular senescence, leading to imbalanced tissue
maintenance, cell death and compromised organ function. This is first observed in the thymus, the primary lymphoid organ that generates and selects T cells. However, the molecular and cellular
mechanisms underpinning these ageing processes remain unclear. Here, we show that mouse
ageing leads to less efficient T cell selection, decreased self-antigen representation and increased T cell receptor repertoire diversity. Using a combination of single-cell RNA-seq and lineage-tracing,
we find that progenitor cells are the principal targets of ageing, whereas the function of individual
mature thymic epithelial cells is compromised only modestly. Specifically, an early-life precursor cell
population, retained in the mouse cortex postnatally, is virtually extinguished at puberty. Concomitantly, a medullary precursor cell quiesces, thereby impairing maintenance of the
medullary epithelium. Thus, ageing disrupts thymic progenitor differentiation and impairs the core immunological functions of the thymus.
Original languageEnglish
Article numbere56221
Number of pages27
JournaleLife
Volume9
Early online date25 Aug 2020
DOIs
Publication statusPublished - Aug 2020

Bibliographical note

e gratefully acknowledge the Chan Zuckerberg Biohub for support and for sequencing, and members of the Tabula Muris Consortium for technical assistance. CPP is funded by the MRC (MC_UU_00007/15). CPP, GH, JB and MDM were supported by the Wellcome Trust (grant 105045/Z/14/Z). JCM was supported by core funding from the European Molecular Biology Laboratory and
from Cancer Research UK (award number 17197). GH and ICA was supported by the Swiss National Science Foundation (grant numbers IZLJZ3_171050 and 310030_184672). AEH was supported by a Clinical Lectureship from the NIHR. FD was supported by the Wellcome Trust [109032/Z/15/Z].

Data Availability Statement

code used to process data and perform analyses is available from https://github.com/WTSAHomunculus/Ageing2019 (Baran-Gale, 2020; copy archived at https://github.com/elifesciences-publications/Ageing2019). All sequence data, counts matrices and meta-data are available from ArrayExpress with accession numbers E-MTAB-8560 (ageing thymus) and E-MTAB-8737 (lineage traced thymus). TCR sequencing data is available from SRA (PRJNA551022).

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