The era of reference genomes in conservation genomics

Giulio Formenti; Kathrin Theissinger; Carlos Fernandes; Iliana Bista; Aureliano Bombarely; Christoph Bleidorn; Claudio Ciofi; Angelica Crottini; José A. Godoy; Jacob Hoglund; Joanna Malukiewicz; Alice Mouton; Rebekah A. Oomen; Sadye Paez; Per J. Palsbøll; Christophe Pampoulie; María J. Ruiz-López; Hannes Svardal; Constantina Theofanopoulou; Jan de Vries; Ann Marie Waldvogel; Guojie Zhang; Camila J. Mazzoni; Erich Jarvis; Miklós Bálint; European Reference Genome Atlas (ERGA) Consortium

doi:10.1016/j.tree.2021.11.008

The era of reference genomes in conservation genomics

Giulio Formenti, Kathrin Theissinger, Carlos Fernandes, Iliana Bista, Aureliano Bombarely, Christoph Bleidorn, Claudio Ciofi, Angelica Crottini, José A. Godoy, Jacob Hoglund, Joanna Malukiewicz, Alice Mouton, Rebekah A. Oomen, Sadye Paez, Per J. Palsbøll, Christophe Pampoulie, María J. Ruiz-López, Hannes Svardal, Constantina Theofanopoulou, Jan de VriesAnn Marie Waldvogel, Guojie Zhang, Camila J. Mazzoni, Erich Jarvis, Miklós Bálint^*, European Reference Genome Atlas (ERGA) Consortium

^*Corresponding author for this work

Aberdeen Centre For Environmental Sustainability

Research output: Contribution to journal › Short survey › peer-review

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Abstract

Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics.

Original language	English
Pages (from-to)	197-202
Number of pages	6
Journal	Trends in Ecology and Evolution
Volume	37
Issue number	3
Early online date	8 Feb 2022
DOIs	https://doi.org/10.1016/j.tree.2021.11.008
Publication status	Published - Mar 2022

Bibliographical note

Funding Information:
We thank Fabien Condamine, Love Dal?n, Richard Durbin, Bruno Fosso, Roderic Guig?, Marc Hanikenne, Alberto Pallavicini, Olga Vinnere Pettersson, Xavier Turon, and Detlef Weigel for their contributions to the manuscript, as well as the whole ERGA community for their ongoing support. We refer to the supplemental information online for acknowledgements for individual authors. The authors declare no conflicts of interest.

Keywords

biodiversity conservation
conservation genetics
ERGA
European Reference Genome Atlas

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Formenti, G., Theissinger, K., Fernandes, C., Bista, I., Bombarely, A., Bleidorn, C., Ciofi, C., Crottini, A., Godoy, J. A., Hoglund, J., Malukiewicz, J., Mouton, A., Oomen, R. A., Paez, S., Palsbøll, P. J., Pampoulie, C., Ruiz-López, M. J., Svardal, H., Theofanopoulou, C., ... European Reference Genome Atlas (ERGA) Consortium (2022). The era of reference genomes in conservation genomics. Trends in Ecology and Evolution, 37(3), 197-202. https://doi.org/10.1016/j.tree.2021.11.008

Formenti, G, Theissinger, K, Fernandes, C, Bista, I, Bombarely, A, Bleidorn, C, Ciofi, C, Crottini, A, Godoy, JA, Hoglund, J, Malukiewicz, J, Mouton, A, Oomen, RA, Paez, S, Palsbøll, PJ, Pampoulie, C, Ruiz-López, MJ, Svardal, H, Theofanopoulou, C, de Vries, J, Waldvogel, AM, Zhang, G, Mazzoni, CJ, Jarvis, E, Bálint, M & European Reference Genome Atlas (ERGA) Consortium 2022, 'The era of reference genomes in conservation genomics', Trends in Ecology and Evolution, vol. 37, no. 3, pp. 197-202. https://doi.org/10.1016/j.tree.2021.11.008

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title = "The era of reference genomes in conservation genomics",

abstract = "Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics.",

keywords = "biodiversity conservation, conservation genetics, ERGA, European Reference Genome Atlas",

author = "Giulio Formenti and Kathrin Theissinger and Carlos Fernandes and Iliana Bista and Aureliano Bombarely and Christoph Bleidorn and Claudio Ciofi and Angelica Crottini and Godoy, {Jos{\'e} A.} and Jacob Hoglund and Joanna Malukiewicz and Alice Mouton and Oomen, {Rebekah A.} and Sadye Paez and Palsb{\o}ll, {Per J.} and Christophe Pampoulie and Ruiz-L{\'o}pez, {Mar{\'i}a J.} and Hannes Svardal and Constantina Theofanopoulou and {de Vries}, Jan and Waldvogel, {Ann Marie} and Guojie Zhang and Mazzoni, {Camila J.} and Erich Jarvis and Mikl{\'o}s B{\'a}lint and Fedor {\v C}iampor and Jacob Hoglund and Per Palsb{\o}ll and Ruiz-L{\'o}pez, {Mar{\'i}a Jos{\'e}} and Goujie Zhang and Erich Jarvis and Aghayan, {Sargis A.} and Alioto, {Tyler S.} and Isabel Almudi and Nadir Alvarez and Alves, {Paulo C.} and Amorim, {Isabel R.} and Agostinho Antunes and Paula Arribas and Petr Baldrian and Berg, {Paul R.} and Giorgio Bertorelle and Astrid B{\"o}hne and Andrea Bonisoli-Alquati and Bo{\v s}tjan{\v c}i{\'c}, {Ljudevit L.} and Bastien Boussau and Breton, {Catherine M.} and Elena Buzan and Campos, {Paula F.} and Layton, {Kara K.S.} and {European Reference Genome Atlas (ERGA) Consortium}",

note = "Funding Information: We thank Fabien Condamine, Love Dal?n, Richard Durbin, Bruno Fosso, Roderic Guig?, Marc Hanikenne, Alberto Pallavicini, Olga Vinnere Pettersson, Xavier Turon, and Detlef Weigel for their contributions to the manuscript, as well as the whole ERGA community for their ongoing support. We refer to the supplemental information online for acknowledgements for individual authors. The authors declare no conflicts of interest. ",

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doi = "10.1016/j.tree.2021.11.008",

language = "English",

volume = "37",

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AU - Formenti, Giulio

AU - Theissinger, Kathrin

AU - Fernandes, Carlos

AU - Bista, Iliana

AU - Bombarely, Aureliano

AU - Bleidorn, Christoph

AU - Ciofi, Claudio

AU - Crottini, Angelica

AU - Godoy, José A.

AU - Hoglund, Jacob

AU - Malukiewicz, Joanna

AU - Mouton, Alice

AU - Oomen, Rebekah A.

AU - Paez, Sadye

AU - Palsbøll, Per J.

AU - Pampoulie, Christophe

AU - Ruiz-López, María J.

AU - Svardal, Hannes

AU - Theofanopoulou, Constantina

AU - de Vries, Jan

AU - Waldvogel, Ann Marie

AU - Zhang, Guojie

AU - Mazzoni, Camila J.

AU - Jarvis, Erich

AU - Bálint, Miklós

AU - Čiampor, Fedor

AU - Hoglund, Jacob

AU - Palsbøll, Per

AU - Ruiz-López, María José

AU - Zhang, Goujie

AU - Jarvis, Erich

AU - Aghayan, Sargis A.

AU - Alioto, Tyler S.

AU - Almudi, Isabel

AU - Alvarez, Nadir

AU - Alves, Paulo C.

AU - Amorim, Isabel R.

AU - Antunes, Agostinho

AU - Arribas, Paula

AU - Baldrian, Petr

AU - Berg, Paul R.

AU - Bertorelle, Giorgio

AU - Böhne, Astrid

AU - Bonisoli-Alquati, Andrea

AU - Boštjančić, Ljudevit L.

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AU - Breton, Catherine M.

AU - Buzan, Elena

AU - Campos, Paula F.

AU - Layton, Kara K.S.

AU - European Reference Genome Atlas (ERGA) Consortium

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PY - 2022/3

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N2 - Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics.

AB - Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics.

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KW - conservation genetics

KW - ERGA

KW - European Reference Genome Atlas

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U2 - 10.1016/j.tree.2021.11.008

DO - 10.1016/j.tree.2021.11.008

M3 - Short survey

C2 - 35086739

AN - SCOPUS:85123684072

SN - 0169-5347

VL - 37

SP - 197

EP - 202

JO - Trends in Ecology and Evolution

JF - Trends in Ecology and Evolution

IS - 3

ER -

The era of reference genomes in conservation genomics

Abstract

Bibliographical note

Keywords

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