Research output per year
Research output per year
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2024
Can nutritional programming in Atlantic salmon (Salmo salar) be optimised with a reduced stimulus period?
McMillan, S., Martin, S. A. M., Król, E., Norambuena, F., Baumgärtner, S., Gong, X., Tawfik, M. M., Glencross, B., Taylor, J. F., Tocher, D. R. & Betancor, M. B., 15 May 2024, In: Aquaculture. 585, 13 p., 740686.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
Mapping the cellular landscape of Atlantic salmon head kidney by single cell and single nucleus transcriptomics
Andresen, A. M. S., Taylor, R. S., Grimholt, U., Daniels, R. R., Sun, J., Dobie, R., Henderson, N. C., Martin, S. A. M., Macqueen, D. J. & Fosse, J. H., Mar 2024, In: Fish & Shellfish Immunology. 146, 18 p., 109357.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus) -
Cell atlas of the Atlantic salmon spleen reveals immune cell heterogeneity and cell-specific responses to bacterial infection
Sun, J., Ruiz Daniels, R., Balic, A., Andresen, A. M. S., Bjørgen, H., Dobie, R., Henderson, N. C., Koppang, E. O., Martin, S. A. M., Fosse, J. H., Taylor, R. S. & Macqueen, D. J., Feb 2024, In: Fish & Shellfish Immunology. 145, p. 109358 17 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus) -
2023
Time is a stronger predictor of microbiome community composition than tissue in external mucosal surfaces of Atlantic salmon (Salmo salar) reared in a semi-natural freshwater environment
Lorgen-Ritchie, M., Chalmers, L., Clarkson, M., Taylor, J. F., Migaud, H. & Martin, S. A. M., 15 Oct 2023, In: Aquaculture. 566, 11 p., 739211.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus)2 Downloads (Pure) -
Phylogeny and expression of tetraspanin CD9 paralogues in rainbow trout (Oncorhynchus mykiss)
Dehler, C. E., Boudinot, P., Collet, B. & Martin, S. A. M., Sept 2023, In: Developmental and Comparative Immunology. 146, 12 p., 104735.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Downloads (Pure) -
Catch of the Day: New Serum Amyloid A (SAA) Antibody Is a Valuable Tool to Study Fish Health in Salmonids
Buks, R., Alnabulsi, A., Zindrili, R., Alnabulsi, A., Wang, A., Wang, T. & Martin, S. A. M., 19 Aug 2023, In: Cells. 12, 16, 16 p., 2097.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Downloads (Pure) -
Conserved and divergent arms of the antiviral response in the duplicated genomes of salmonid fishes
Clark, T., Naseer, S., Gundappa, M. K., Laurent, A., Perquis, A., Collet, B., Macqueen, D. J., Martin, S. A. M. & Boudinot, P., 1 Jul 2023, In: Genomics. 115, 4, 110663.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)1 Downloads (Pure) -
Microbiomes in the context of developing sustainable intensified aquaculture
Lorgen-Ritchie, M., Uren Webster, T., McMurtrie, J., Bass, D., Tyler, C. R., Rowley, A. & Martin, S. A. M., 23 Jun 2023, In: Frontiers in Microbiology. 14, 16 p., 1200997.Research output: Contribution to journal › Review article › peer-review
Open AccessFile3 Citations (Scopus)1 Downloads (Pure) -
Deciphering the Immunostimulatory Effects of β-Glucan on a Rainbow Trout (Oncorhynchus mykiss) Macrophage-like Cell Line (RTS11) by Whole Transcriptome Analysis: Genes
Porter, D., Naseer, S., Peggs, D., McGurk, C. & Martin, S. A., 14 Jun 2023, In: Genes. 14, 6, 17 p., 1261.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus) -
Fur removal promotes an earlier expression of involution-related genes in mammary gland of lactating mice
Krol, E., Turner, F., Derous, D., Mitchell, S. E., Martin, S., Douglas, A. & Speakman, J., 1 Mar 2023, In: Journal of Comparative Physiology. B, Biochemical, Systemic, and Environmental Physiology. p. 171-192 22 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Downloads (Pure) -
In-vivo analysis of Protec™ and β-glucan supplementation on innate immune performance and intestinal health of rainbow trout
Porter, D., Peggs, D., McGurk, C. & Martin, S. A. M., Mar 2023, In: Fish & Shellfish Immunology. 134, 13 p., 108573.Research output: Contribution to journal › Article › peer-review
Open AccessFile3 Citations (Scopus)3 Downloads (Pure) -
2022
Transcriptomic response to ISAV infection in the gills, head kidney and spleen of resistant and susceptible Atlantic salmon
Gervais, O., Papadopoulou, A., Gratacap, R., Hillestad, B., Tinch, A. E., Martin, S. A. M., Houston, R. D. & Robledo, D., 28 Nov 2022, In: BMC Genomics. 23, 13 p., 775.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus)2 Downloads (Pure) -
Gut Associated Lymphoid Tissue (GALT) primary cells and stable cell lines as predictive models for intestinal health in rainbow trout (Oncorhynchus mykiss)
Porter, D., Peggs, D., McGurk, C. & Martin, S. A. M., 20 Oct 2022, In: Frontiers in Immunology. 13, 15 p., 1023235.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)9 Downloads (Pure) -
Temporal changes in skin and gill microbiomes of Atlantic salmon in a recirculating aquaculture system – Why do they matter?
Lorgen-Ritchie, M., Clarkson, M., Chalmers, L., Taylor, J. F., Migaud, H. & Martin, S. A. M., 15 Sept 2022, In: Aquaculture. 558, 12 p., 738352.Research output: Contribution to journal › Article › peer-review
Open AccessFile9 Citations (Scopus)4 Downloads (Pure) -
Single cell transcriptomics of Atlantic salmon (Salmo salar L.) liver reveals cellular heterogeneity and immunological responses to challenge by Aeromonas salmonicida.
Taylor, R. S., Ruiz Daniels, R., Dobie, R., Naseer, S., Clark, T. C., Henderson, N. C., Boudinot, P., Martin, S. A. M. & Macqueen, D. J., 24 Aug 2022, In: Frontiers in Immunology. 13, 17 p., 984799.Research output: Contribution to journal › Article › peer-review
Open AccessFile10 Citations (Scopus)3 Downloads (Pure) -
Immune responses to prebiotics in farmed salmonid fish: How transcriptomic approaches help interpret responses
Porter, D., Peggs, D., McGurk, C. & Martin, S., 1 Aug 2022, In: Fish & Shellfish Immunology. 127, p. 35-47 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile7 Citations (Scopus) -
Interactive effects of dietary lipid and nutritional emulsifier supplementation on growth, chemical composition, immune response and lipid metabolism of juvenile Nile tilapia (Oreochromis niloticus)
Wangkahart, E., Bruneel, B., Wisetsri, T., Nontasan, S., Martin, S. A. M. & Chantiratikul, A., 15 Jan 2022, In: Aquaculture. 546, 12 p., 737341.Research output: Contribution to journal › Article › peer-review
18 Citations (Scopus) -
Tenebrio molitor larvae meal inclusion affects hepatic proteome and apoptosis and/or autophagy of three farmed fish species
Mente, E., Bousdras, T., Feidantsis, K., Panteli, N., Mastoraki, M., Kormas, K. A., Chatzifotis, S., Piccolo, G., Gasco, L., Gai, F., Martin, S. A. M. & Antonopoulou, E., 7 Jan 2022, In: Scientific Reports. 12, 1, 14 p., 121.Research output: Contribution to journal › Article › peer-review
Open AccessFile12 Citations (Scopus)2 Downloads (Pure) -
Genome-wide reconstruction of rediploidization following autopolyploidization across one hundred million years of salmonid evolution
Gundappa, M. K., To, T-H., Grønvold, L., Martin, S. A. M., Lien, S., Geist, J., Hazlerigg, D., Sandve, S. R. & Macqueen, D. J., 1 Jan 2022, In: Molecular Biology and Evolution. 39, 1, 18 p., msab310.Research output: Contribution to journal › Article › peer-review
Open AccessFile17 Citations (Scopus)5 Downloads (Pure) -
2021
Gill Transcriptomic Responses to Toxin-producing Alga Prymnesium parvum in Rainbow Trout
Clinton, M., Król, E., Sepúlveda, D., Andersen, N. R., Brierley, A. S., Ferrier, D. E. K., Hansen, P. J., Lorenzen, N. & Martin, S. A. M., 8 Dec 2021, In: Frontiers in Immunology. 12, 17 p., 794593.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus)8 Downloads (Pure) -
Sampling the fish gill microbiome: a comparison of tissue biopsies and swabs
Clinton, M., Wyness, A. J., Martin, S. A. M., Brierley, A. S. & Ferrier, D. E. K., 10 Nov 2021, In: BMC Microbiology. 21, 15 p., 313.Research output: Contribution to journal › Article › peer-review
Open AccessFile17 Citations (Scopus)7 Downloads (Pure) -
Artificial Intelligence Driven Platforms to Develop Novel Assays to Monitor Fish Health
Buks, R., Hu, Y., Alnabulsi, A., Alnabulsi, A., Secombes, C., Wang, T. & Martin, S., 4 Oct 2021. 1 p.Research output: Contribution to conference › Poster
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Impacts of jellyfish on marine cage aquaculture: An overview of existing knowledge and the challenges to finfish health
Clinton, M., Ferrier, D. E. K., Martin, S. A. M. & Brierley, A. S., 1 Aug 2021, In: ICES Journal of Marine Science. 78, 5, p. 1557-1573 17 p.Research output: Contribution to journal › Review article › peer-review
17 Citations (Scopus) -
A Temporally Dynamic Gut Microbiome in Atlantic Salmon During Freshwater Recirculating Aquaculture System (RAS) Production and Post-seawater Transfer
Lorgen-Ritchie, M., Clarkson, M., Chalmers, L., Taylor, J. F., Migaud, H. & Martin, S. A. M., 6 Jul 2021, In: Frontiers in Marine Science. 8, 14 p., 869.Research output: Contribution to journal › Article › peer-review
Open AccessFile21 Citations (Scopus)10 Downloads (Pure) -
Immunologic Profiling of the Atlantic Salmon Gill by Single Nuclei Transcriptomics
West, A. C., Mizoro, Y., Wood, S. H., Ince, L. M., Iversen, M., Jørgensen, E. H., Nome, T., Sandve, S. R., Martin, S. A. M., Loudon, A. S. I. & Hazlerigg, D. G., 4 May 2021, In: Frontiers in Immunology. 12, 11 p., 669889.Research output: Contribution to journal › Article › peer-review
Open AccessFile18 Citations (Scopus)6 Downloads (Pure) -
Photoperiod-dependent developmental reprogramming of the transcriptional response to seawater entry in Atlantic salmon (Salmo salar)
Iversen, M., Mulugeta, T., West, A., Jørgensen, E. H., Martin, S. A. M., Sandve, S. R. & Hazlerigg, D., 1 Apr 2021, In: G3: Genes, Genomes, Genetics Mission. 11, 4, 9 p., jkab072.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus)5 Downloads (Pure) -
Exploring genetic resistance to infectious salmon anaemia virus in Atlantic salmon by genome-wide association and RNA sequencing
Gervais, O., Barria, A., Papadopoulou, A., Gratacap, R. L., Hillestad, B., Tinch, A. E., Martin, S. A. M., Robledo, D. & Houston, R. D., 2021, In: BMC Genomics. 22, 1, 14 p., 345.Research output: Contribution to journal › Article › peer-review
Open AccessFile7 Citations (Scopus)2 Downloads (Pure) -
2020
The structural variation landscape in 492 Atlantic salmon genomes
Bertolotti, A. C., Layer, R. M., Gundappa, M. K., Gallagher, M. D., Pehlivanoglu, E., Nome, T., Robledo, D., Kent, M. P., Røsæg, L. L., Holen, M. M., Mulugeta, T. D., Ashton, T. J., Hindar, K., Sægrov, H., Florø-Larsen, B., Erkinaro, J., Primmer, C. R., Bernatchez, L., Martin, S. A. M., Johnston, I. A., & 3 others, 14 Oct 2020, In: Nature Communications. 11, 16 p., 5176.Research output: Contribution to journal › Article › peer-review
Open AccessFile55 Citations (Scopus)2 Downloads (Pure) -
Effect of Substituting Soybean Meal with Moringa oleifera Meal on the Growth and Body Composition of Labeo rohita Fingerlings
Masood, D., Khan, N., Iqbal, K. J., Dogar, S., Hanan, A., Nazir, S., Bano, S., Anwar, A., Martin, S. A. M. & Secombes, C. J., Oct 2020, In: Pakistan Journal of Zoology. 52, 5, p. 1745-1750 6 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile3 Citations (Scopus)12 Downloads (Pure) -
Harnessing genomics to fast-track genetic improvement in aquaculture
Houston, R. D., Bean, T. P., MacQueen, D. J., Gundappa, M. K., Jin, Y. H., Jenkins, T. L., Selly, S. L. C., Martin, S. A. M., Stevens, J. R., Santos, E. M., Davie, A. & Robledo, D., Jul 2020, In: Nature Reviews Genetics. 21, 7, p. 389-409 21 p.Research output: Contribution to journal › Article › peer-review
265 Citations (Scopus) -
Efficient CRISPR/Cas9 genome editing in a salmonid fish cell line using a lentivirus delivery system
Gratacap, R. L., Regan, T., Dehler, C. E., Martin, S. A. M., Boudinot, P., Collet, B. & Houston, R. D., 23 Jun 2020, In: BMC Biotechnology. 20, 9 p., 35.Research output: Contribution to journal › Article › peer-review
Open AccessFile36 Citations (Scopus)9 Downloads (Pure) -
Integration of Transcriptome, Gross Morphology and Histopathology in the Gill of Sea Farmed Atlantic Salmon (Salmo salar): Lessons from Multi-site Sampling
Krol, E., Noguera, P., Shaw, S., Costelloe, E., Gajardo, K., Valdenegro, V., Bickerdike, R., Douglas, A. & Martin, S. A. M., 19 Jun 2020, In: Frontiers in Genetics. 11, 20 p., 610.Research output: Contribution to journal › Article › peer-review
Open AccessFile17 Citations (Scopus)5 Downloads (Pure) -
Arginine, ornithine and citrulline supplementation in rainbow trout: Free amino acid dynamics and gene expression responses to bacterial infection
Clark, T. C., Tinsley, J., Sigholt, T., MacQueen, D. J. & Martin, S. A. M., Mar 2020, In: Fish & Shellfish Immunology. 98, p. 374-390 17 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile14 Citations (Scopus)4 Downloads (Pure) -
Supplementation of arginine, ornithine and citrulline in rainbow trout (Oncorhynchus mykiss): Effects on growth, amino acid levels in plasma and gene expression responses in liver tissue
Clark, T. C., Tinsley, J., Sigholt, T., Macqueen, D. J. & Martin, S. A. M., Mar 2020, In: Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology. 241, 15 p., 110632.Research output: Contribution to journal › Article › peer-review
Open AccessFile19 Citations (Scopus)4 Downloads (Pure) -
2019
From gross morphology to gill transcriptome in farmed Atlantic salmon (Salmo salar): Lessons from multi-site sampling
Krol, E., Douglas, A., Noguera, P., Valdenegro, V., Gajardo, K., Bickerdike, R. & Martin, S. A. M., Aug 2019, In: Fish & Shellfish Immunology. 91, p. 467 1 p.Research output: Contribution to journal › Abstract › peer-review
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Gene encoding enzymes in the urea cycle and polyamine synthesis are modulated during an inflammatory response in rainbow trout (Oncorhynchus mykiss)
Clark, T., Tinsley, J., Macqueen, D. J. & Martin, S. A. M., Aug 2019, In: Fish & Shellfish Immunology. 91, p. 468 1 p.Research output: Contribution to journal › Abstract › peer-review
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Impact of sea lice (Caligus rogercresseyi) infection levels on skin transcriptome in Atlantic salmon (Salmo salar)
Zindrili, R., Krol, E., Mente, E., Douglas, A. & Martin, S. A. M., Aug 2019, In: Fish & Shellfish Immunology. 91, p. 436-437 2 p.Research output: Contribution to journal › Abstract › peer-review
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Long-term, proteome-scale analysis of rainbow trout immune proteins: Implications for aquaculture vaccine development
Bakke, F. K., Monte, M. M., Causey, D., Cornulier, T., Douglas, A., Stead, D., Martin, S. A. M., Macqueen, D. J. & Dooley, H., Aug 2019, In: Fish & Shellfish Immunology. 91, p. 453 1 p.Research output: Contribution to journal › Abstract › peer-review
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Phylogeny and expression of the tetraspanin CD9 in salmonid cell lines in response to interferon stimulation
Dehler, C. E., Boudinot, P., Collet, B. & Martin, S. A. M., Aug 2019, In: Fish & Shellfish Immunology. 91, p. 433 1 p.Research output: Contribution to journal › Abstract › peer-review
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Viral Resistance and IFN Signaling in STAT2 Knockout Fish Cells
Dehler, C. E., Lester, K., Della Pelle, G., Jouneau, L., Houel, A., Collins, C., Dovgan, T., Machat, R., Zou, J., Boudinot, P., Martin, S. A. M. & Collet, B., 15 Jul 2019, In: The Journal of Immunology. 203, 2, p. 465-475 11 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile39 Citations (Scopus)17 Downloads (Pure) -
The AMPK system of salmonid fishes was expanded through genome duplication and is regulated by growth and immune status in muscle
Causey, D. R., Kim, J. H., Devlin, R. H., Martin, S. A. M. & Macqueen, D. J., 8 Jul 2019, In: Scientific Reports. 9, 11 p., 9819.Research output: Contribution to journal › Article › peer-review
Open AccessFile12 Citations (Scopus)4 Downloads (Pure) -
Rainbow trout (Oncorhynchus mykiss) urea cycle and polyamine synthesis gene families show dynamic expression responses to inflammation
Clark, T. C., Tinsley, J., Macqueen, D. J. & Martin, S. A. M., Jun 2019, In: Fish & Shellfish Immunology. 89, p. 290-300 11 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile19 Citations (Scopus)7 Downloads (Pure) -
Evaluation of Early Nutritional Programming on Fish Performance, Intestinal Transcriptome and Microbiome in Atlantic Salmon (Salmo salar)
Tawfik, M. M. M., Douglas, A., Tocher, D. R. & Martin, S., Apr 2019, p. 1. 1 p.Research output: Contribution to conference › Poster
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Proteomic comparison of selective breeding and growth hormone transgenesis in fish: Unique pathways to enhanced growth
Causey, D. R., Kim, J-H., Stead, D. A., Martin, S. A. M., Devlin, R. H. & Macqueen, D. J., 10 Feb 2019, In: Journal of Proteomics. 192, p. 114-124 11 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile26 Citations (Scopus)7 Downloads (Pure) -
2018
Four selenoprotein P genes exist in salmonids: Analysis of their origin and expression following Se supplementation and bacterial infection
Pohl, M. A. N., Wang, T., Pohl, T., Sweetman, J., Martin, S. A. M. & Secombes, C. J., 20 Dec 2018, In: PloS ONE. 13, 12, e0209381.Research output: Contribution to journal › Article › peer-review
Open AccessFile6 Citations (Scopus)6 Downloads (Pure) -
Contrasting effects of acute and chronic stress on the transcriptome, epigenome, and immune response of Atlantic salmon
Uren Webster, T. M., Rodriguez-Barreto, D., Martin, S. A. M., van Oosterhout, C., Orozco-terWengel, P., Cable, J., Hamilton, A., Garcia de Leaniz, C. & Consuegra, S., Dec 2018, In: Epigenetics. 13, 12, p. 1191-1207 17 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile55 Citations (Scopus)5 Downloads (Pure) -
High-throughput proteomic profiling of the fish liver following bacterial infection
Causey, D. R., Pohl, M. A. N., Stead, D. A., Martin, S. A. M., Secombes, C. J. & MacQueen, D., 1 Oct 2018, In: BMC Genomics. 19, 17 p., 719.Research output: Contribution to journal › Article › peer-review
Open AccessFile68 Citations (Scopus)10 Downloads (Pure) -
Growth hormone transgenesis in coho salmon disrupts muscle immune function impacting cross-talk with growth systems
Alzaid, A., Kim, J-H., Devlin, R. H., Martin, S. & MacQueen, D. J., 4 Jul 2018, In: Journal of Experimental Biology. 221, 13, jeb173146.Research output: Contribution to journal › Article › peer-review
Open AccessFile19 Citations (Scopus)5 Downloads (Pure) -
Core vs. diet -associated and postprandial bacterial communities of the rainbow trout (Oncorhynchus mykiss) midgut and feaces
Mente, E., Nikouli, E., Antonopoulou, E., Martin, S. A. M. & Kormas, K. A., 13 Jun 2018, In: Open Biology. 7, bio034397.Research output: Contribution to journal › Article › peer-review
Open AccessFile21 Citations (Scopus)8 Downloads (Pure) -
Proteomics in fish and aquaculture research
Rodrigues, P. M., Martin, S. A. M., Silva, T. S., Boonanuntanasarn, S., Schrama, D., Moreira, M. & Raposo, C., 1 Feb 2018, Proteomics in Domestic Animals: from Farm to Systems Biology. de Almeida, A. M., Eckersall, D. & Miller, I. (eds.). Springer International Publishing AG, p. 311-338 28 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
13 Citations (Scopus)