Life Sciences & Medicine

2024

Farm Explorer: A Tool for Calculating Transparent Greenhouse Gas Emissions

Markovic, M., Germano, S., Garijo, D., Edwards, P., Li, A., Ayall, T. A., Ramsey, R. & Leontidis, G., 31 Aug 2024, (Accepted/In press) CEUR Workshop Proceedings.

Research output: Chapter in Book/Report/Conference proceeding › Published conference contribution

Enhancing Abstract Screening Classification in Evidence-Based Medicine: Incorporating Domain Knowledge into Pre-trained Models

Ofori-Boateng, R., Aceves-Martins, M., Wirantuga, N. & Moreno-García, C. F., 25 Jul 2024, Artificial Intelligence in Medicine: 22nd International Conference, AIME 2024, Salt Lake City, UT, USA, July 9–12, 2024, Proceedings, Part I. Finkelstein, J., Moskovitch, R. & Parimbelli, E. (eds.). Springer Science and Business Media Deutschland GmbH, p. 261-272 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14844 LNAI).

Research output: Chapter in Book/Report/Conference proceeding › Published conference contribution

A ‘Theory of the Middle Range’ to Support Food Security and Circular Economy Value Chain Scenario Analysis

Polhill, G., McCormick, B. J. J., Roxburgh, N., Assefa, S. & Matthews, K., 21 Jul 2024, Advances in Social Simulation - : Proceedings of the 18th Social Simulation Conference, 2023. Elsenbroich, C. & Verhagen, H. (eds.). Springer Science and Business Media B.V., p. 177-186 10 p. (Springer Proceedings in Complexity).

Research output: Chapter in Book/Report/Conference proceeding › Published conference contribution

Repurposing an Offshore Oil and Gas Platform for Green Hydrogen Production: A North Sea Case Study

Wilcox, L. B., Wiranegara, N. K., Martinez-Felipe, A. & Hastings, A., 24 Jun 2024, Society of Petroleum Engineers - SPE Europe Energy Conference and Exhibition, EURO 2024. Society of Petroleum Engineers (SPE), SPE-220114-MS

Research output: Chapter in Book/Report/Conference proceeding › Published conference contribution

A Zero-Shot Monolingual Dual Stage Information Retrieval System for Spanish Biomedical Systematic Literature Reviews

Ofori-Boateng, R., Aceves-Martins, M., Wirantuga, N. & Moreno-García, C. F., 16 Jun 2024, Proceedings of the 2024 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, NAACL 2024. Duh, K., Gomez, H. & Bethard, S. (eds.). Association for Computational Linguistics (ACL), p. 3725-3736 12 p.

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More Than Meets the Eye? An Experimental Design to Test Robot Visual Perspective-Taking Facilitators Beyond Mere-Appearance

Currie, J. W., McDonough, K., Wykowska, A., Giannaccini, M. & Bach, P., 11 Mar 2024, Companion of the 2024 ACM/IEEE International Conference on Human-Robot Interaction : HRI '24 Companion. Association for Computing Machinery (ACM)

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2023

Wearable Sensors Based Human Core Body Temperature Computing Method

Jiang, L., Wang, Y., Li, Y., Tao, B., Sun, F. & Speakman, J., 25 Dec 2023, 2023 IEEE International Conference on Dependable, Autonomic and Secure Computing, International Conference on Pervasive Intelligence and Computing, International Conference on Cloud and Big Data Computing, International Conference on Cyber Science and Technology Congress: DASC/PiCom/CBDCom/CyberSciTech 2023. Institute of Electrical and Electronics Engineers Inc., p. 499-504 6 p.

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1 Citation (Scopus)

Handling Class Imbalance in Machine Learning-based Prediction Models: A Case Study in Asthma Management

Budiarto, A. (Corresponding Author), Wilson, A., Price, D., Shah, S. A. & Sheikh, A., 11 Dec 2023, 2023 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC). IEEE Explore, 5 p.

Research output: Chapter in Book/Report/Conference proceeding › Published conference contribution

Attribution and Alignment: Effects of Local Context Repetition on Utterance Production and Comprehension in Dialogue

Molnar, A., Jumelet, J., Giulianelli, M. & Sinclair, A., Dec 2023, CoNLL 2023 - 27th Conference on Computational Natural Language Learning, Proceedings. Jiang, J., Reitter, D. & Deng, S. (eds.). Association for Computational Linguistics (ACL), p. 254-273 20 p.

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Impact of Relaxing Trade Barriers between Sri Lanka and India: A Computable General Equilibrium Analysis

Rathnayaka, S. D., Korale-Gedara, P. & Athapaththu, A. M. P. A. (Corresponding Author), 20 Sept 2023, iPURSE 2023 : Navigating the new frontiers: exploring opportunities . Peradeniya, Sri Lanka: University of Peradeniya, Vol. 24. p. 262 1 p. (Proceedings of Peradeniya University International Research Sessions).

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Open Access

An Ultracompact Underwater Digital Holographic Camera for Study of Marine Microorganisms

Thevar, T., Eerkes-Medrano, D., Burns, N., Ockwell, M. & Watson, J., 12 Sept 2023, OCEANS 2023-Limerick. IEEE Explore, p. 1-8 8 p.

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Machine-Learning-based Size Estimation of Marine Particles in Holograms Recorded by a Submersible Digital Holographic Camera

Liu, Z., Giering, S., Thevar, T., Burns, N., Ockwell, M. & Watson, J., 12 Sept 2023, OCEANS 2023 - Limerick. IEEE Explore, p. 1-8 8 p.

Research output: Chapter in Book/Report/Conference proceeding › Published conference contribution

Morphological changes in normal, premalignant and malignant oropharyngeal epithelial tissues

Clare, P. & Abu Eid, R., 17 Aug 2023, Proceedings - 2023 24th International Conference on Control Systems and Computer Science, CSCS 2023. IEEE Explore, p. 241-248 8 p. (Proceedings - 2023 24th International Conference on Control Systems and Computer Science, CSCS 2023).

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Automated segmentation of cerebral small vessel disease from field-cycling MRI: Proffered Conference Abstract - MIUA 2023

Senn, N., Mallikourti, V., Ross, J., Broche, L., Waiter, G. & Macleod, M., 19 Jul 2023, 27th Conference on Medical Image Understanding and Analysis 2023. Waiter, G., Lambrou, T., Leontidis, G., Oren, N., Morris, T., Gordon, S., McGowan, J. & Nicolson, C. (eds.). Frontiers Media SA, Vol. Frontiers Abstract Book.

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Building the Policy Ecosystem in Europe for Cultivation and Use of Perennial Biomass Crops

Clifton-Brown, J. (Corresponding Author), Hastings, A., von Cossel, M., Murphy-Bokern, D., McCalmont, J., Whitaker, J., Alexopoulou, E., Amaducci, S., Andronic, L., Ashman, C., Awty-Carroll, D., Bhatia, R., Breuer, L., Cosentino, S., Cracroft-Eley, W., Donnison, I., Elbersen, B., Ferrarini, A., Ford, J. & Gattinger, A. & 29 others, Golicz, K., Greef, J., Ingram, J., Jensen, E., Kuhn, U., Lewandowski, I., Magenau, E., Mos, M., Meyer, H., Kasperczyk, N., Petrick, M., Pogrzeba, M., Pude, R., Robson, P., Retzler, C., Rowe, R. L., Sandu, A., Schmitt, A., Schmitt, A., Schwarz, K. U., Scordia, D., Scurlock, J., Shepherd, A., Thornton, J., Trindade, L. M., Vetter, S., Wagner, M., Yamada, T. & Kiesel, A., 8 Jun 2023, 31st European Biomass Conference and Exhibition EUBCE 2023. EUBCE, p. 352-362 11 p. (European Biomass Conference and Exhibition Proceedings).

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Open Access

Responding to rudeness: does instigator status and directness matter?

Irwin, A., Silver-MacMahon, H., Mossop, L., Macconnell, K. & Santos, L., 1 Jun 2023, Ergonomics & human Factors. Balfe, N., Charles, R. & Golightly, D. (eds.). Chartered Institute of Ergonomics and Human Factors, 9 p.

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Open Access

Effect of sampling and storage conditions upon equine fecal microbial community

Ward, A. (Corresponding Author), Harris, P. A., Argo, C. M., Watson, C., Neacsu, M., Russell, W., Ribeiro, A., Collie-Duguid, E., Heidari, Z. & Morrison, P. K., 24 May 2023, Journal of Equine Veterinary Science. Special Issue ed. Vol. 124. 104308

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“A Switch Went off in My Whole Body”: Lived Experiences of Fatigue and Post-Exertional Malaise in Long Covid

Sas, C., Lotankar, Y., Adam, R., Bradbury, K. J., Cooper, J., Hill, D. L., Martinez, V. & Powell, D., 19 Apr 2023, (E-pub ahead of print) Extended Abstracts of the 2023 CHI Conference on Human Factors in Computing Systems. Schmidt, A., Väänänen, K., Goyal, T., Kristensson, P. O. & Peters, A. (eds.). New York: Association for Computing Machinery, 7 p. (CHI EA '23).

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1 Citation (Scopus)

Towards Automatic Cetacean Photo-Identification: A Framework for Fine-Grain, Few-Shot Learning in Marine Ecology

Trotter, C., Wright, N., McGough, A. S., Sharpe, M., Cheney, B., Civil, M. A., Moore, R. T., Allen, J. & Berggren, P., 26 Jan 2023, Proceedings - 2022 IEEE International Conference on Big Data, Big Data 2022. IEEE Explore, p. 1942-1949 8 p.

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1 Citation (Scopus)

Multi-stage Bias Mitigation for Individual Fairness in Algorithmic Decisions

Ghadage, A., Yi, D., Coghill, G. & Pang, W. (Corresponding Author), 2023, Artificial Neural Networks in Pattern Recognition: 10th IAPR TC3 Workshop, ANNPR 2022. El Gayar, N., Trentin, E., Ravanelli, M. & Abbas, H. (eds.). Cham, Switzerland: Springer Science and Business Media Deutschland GmbH, Vol. 13739. p. 40-52 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13739 LNAI).

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2022

Automatic Segmentation of Hip Osteophytes in DXA Scans Using U-Nets

Ebsim, R. (Corresponding Author), Faber, B. G., Saunders, F., Frysz, M., Gregory, J., Harvey, N. C., Tobias, J. H., Lindner, C. & Cootes, T. F., 16 Sept 2022, Medical Image Computing and Computer Assisted Intervention: MICCAI 2022 - 25th International Conference, Proceedings. Wang, L., Dou, Q., Fletcher, P. T., Speidel, S. & Li, S. (eds.). Springer , p. 3-12 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13435 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Published conference contribution

5 Citations (Scopus)

Physical activity in active school settings: Twelve-and fourteen-year-old school children differentially benefit from gesture- and picture-enriched vocabulary training

Andrä, C., Mathias, B., Macedonia, M. & von Kriegstein, K., 8 Sept 2022, Education and Physical Activity in Childhood: Current Challenges and Perspectives: Proceedings of the 4th CIAPSE Congress. Adamakis, M. & Scheuer, C. (eds.). CIAPSE Congress, p. 96-97 2 p.

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Open Access

Give and take? The unexpected benefits of public engagement as an end-in-itself social practice in the Aberdeen Children of the 1950s cohort study

Adamczyk, K., Paranjothy, S. & Johnston, M., 25 Aug 2022, International Journal of Population Data Science, 7(3). 3 ed. Vol. 7.

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Inverse Problems for Gradual Semantics

Oren, N., Yun, B., Vesic, S. & Baptista, M. S., 26 Jul 2022, Proceedings of the Thirty-First International Joint Conference on Artificial Intelligence. De Raedt, L. (ed.). IJCAI, p. 2719-2725 7 p.

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5 Citations (Scopus)

User-Driven Research of Medical Note Generation Software

Knoll, T., Moramarco, F., Papadopoulos Korfiatis, A., Young, R., Ruffini, C., Perera, M., Perstl, C., Reiter, E., Belz, A. & Savkov, A., 15 Jul 2022, Proceedings of the 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies. Carpuat, M., de Marneffe, M.-C. & Meza Ruiz, I. V. (eds.). Association for Computational Linguistics (ACL), p. 385-394 13 p.

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Dynamic neural network approach to human emotion: an analysis based on sliding time windows

Wang, J., Shi, G., Ma, N., Sun, Y., Li, X. & Sui, J., 4 Jul 2022, 2021 IEEE 20th International Conference on Cognitive Informatics & Cognitive Computing (ICCI*CC). IEEE Press, p. 59-66 8 p.

Research output: Chapter in Book/Report/Conference proceeding › Published conference contribution

IEEE ICCI*CC Series in Year 20: Latest Advances in Cognitive Computing (Plenary Panel Report-II)

Kinsner, W., Zhu, H., Baciu, G., Luo, G., Rubio, F., Sui, J., Huang, R., Hiraishi, H., Peng, J. & Chen, L., 4 Jul 2022, 2021 IEEE 20th International Conference on Cognitive Informatics & Cognitive Computing (ICCI*CC). Institute of Electrical and Electronics Engineers (IEEE), p. 264-274 11 p. (International Conference on Cognitive Informatics & Cognitive Computing (ICCI*CC)).

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1 Citation (Scopus)

Does liming grasslands increase biomass production without causing negative impacts on net greenhouse gas emissions?

Abdalla, M., Zavattaro, L., Lellei-Kovacs , E., Espenberg, M., Mander, U., Smith, K., Thorman, R., Dǎmǎtîrcǎ, C., Schils, R., Ten Berge, H., Newell-Price, P. & Smith, P., 27 Jun 2022, Grassland at the heart of circular and sustainable food systems : Proceedings of the 29th General Meeting of the European Grassland Federation Caen, France 26-30 June 2022 . L. Delaby , R. Baumont, V. Brocard, S. Lemauviel-Lavenant, , S. P., F. Vertès & J.L. Peyraud (eds.). European Grassland Federation, Vol. 27. p. 518-520 3 p. (Grassland Science in Europe; vol. 27).

Research output: Chapter in Book/Report/Conference proceeding › Published conference contribution

Participatory IoT Policies: A Case Study of Designing Governance at a Local Level

Mullagh, L., Jacobs, N., Kwon, N., Markovic, M., Wainwright, B., Chekansky, K. & Cooper, R., 25 Jun 2022, Proceedings of DRS2022 Bilbao: Design Research Society International Conference . Lockton, D., Lenzi, S., Hekkert, P., Oak, A., Sádaba, J. & Lloyd, P. (eds.). London: Design Research Society, p. 1-17 17 p. (DRS Conference Volumes).

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Natural and Dammed Rivers: Which is Better for Salmon’s Summer?

Redana, M., Summers, F. & Lancaster, L. T., 24 Jun 2022, Proceedings of the IAHR World Congress. IAHR, p. 5433-5440 8 p.

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1 Citation (Scopus)

Derive Accurate Water Thermal Maps from UAV-Mounted Thermal Camera for Ecological Application

Redana, M., Summers, F. & Lancaster, L. T., Jun 2022, Proceedings of the 39th IAHR World Congress (Granada, 2022). IAHR, p. 5424-5432 9 p.

Research output: Chapter in Book/Report/Conference proceeding › Published conference contribution

Beyond calories: evaluating how tailored communication reduces emotional load in diet-coaching

Balloccu, S. & Reiter, E., 27 May 2022, The 2nd Workshop on Human Evaluation of NLP Systems: Proceedings of the Workshop. Association for Computational Linguists, p. 42-53 12 p.

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Open Access

1 Citation (Scopus)

Human Evaluation and Correlation with Automatic Metrics in Consultation Note Generation

Moramarco, F., Korfiatis, A. P., Perera, M., Juric, D., Flann, J., Reiter, E., Savkov, A. & Belz, A., 1 May 2022, Proceedings of the 60th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers). Muresan, S., Nakov, P. & Villavicencio, A. (eds.). Dublin: Association for Computational Linguistics, Vol. 1. p. 5739–5754 16 p. (Proceedings of the Annual Meeting of the Association for Computational Linguistics; vol. 1).

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Anno-Mi: A dataset of expert- annotated counselling dialogues

Wu, Z. (Corresponding Author), Balloccu, S., Kumar, V., Helaoui, R., Reiter, E., Reforgiato Recupero, D. & Riboni, D., 27 Apr 2022, ICASSP 2022 - 2022 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP). IEEE Explore, p. 6177-6181 5 p. (Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing).

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19 Citations (Scopus)

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Analysis of market participation among vegetable farmers in north-central province, Sri Lanka

Perera, P. A. V. N. K. (Corresponding Author), Rathnayaka, S. D. & Maduwanthi, B. C. H., 26 Jan 2022, 4th International Conference of Agricultural Sciences. AgInsight 2022, Sabaragamuwa University of Sri Lanka, 3 p.

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Community Detection by Resistance Distance: Automation and Benchmark Testing

Gancio, J. & Rubido, N., 2022, Complex Networks and Their Applications X - Proceedings of the 10th International Conference on Complex Networks and Their Applications COMPLEX NETWORKS 2021. Benito, R. M., Cherifi, C., Cherifi, H., Moro, E., Rocha, L. M. & Sales-Pardo, M. (eds.). Springer Science and Business Media Deutschland GmbH, Vol. 1015. p. 309-320 12 p. (Studies in Computational Intelligence; vol. 1015).

Research output: Chapter in Book/Report/Conference proceeding › Published conference contribution

2021

The effects of caloric restriction on adipose tissue and metabolic health are sex- and age-dependent

Thomas, B., Suckacki, K., Fyfe, C., Tavares, A. A. S., Sulston, R., Lovdel, A., Woodward, H., Han, X., Mattiucci , D., Brain , E., Alcaide-Corral, C., Gray, G., Whitfield, P., Stimson, R. H., Morton, N. M., Johnstone, A. & Cawthorn, W. P., Nov 2021, Society for Endocrinology BES 2021: 8–10 November 2021, Edinburgh, UK. BioScientifica, P171. (Endocrine Abstracts; vol. 17).

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Open Access

Explaining Decision-Tree Predictions by Addressing Potential Conflicts between Predictions and Plausible Expectations

Maruf, S., Zukerman, I., Reiter, E. & Haffar, G., 31 Aug 2021, The 14th International Conference on Natural Language Generation: Proceedings of the Conference. p. 114–127 14 p.

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Generation Challenges: Results of the Accuracy Evaluation Shared Task

Thomson, C. & Reiter, E., 31 Aug 2021, The 14th International Conference on Natural Language Generation: Proceedings of the Conference. p. 240–248 9 p.

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11 Citations (Scopus)

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The ReproGen Shared Task on Reproducibility of Human Evaluations in NLG: Overview and Results

Belz, A., Shimorina, A., Agarwal, S. & Reiter, E., 31 Aug 2021, The 14th International Conference on Natural Language Generation: Proceedings of the Conference. p. 249–258 10 p.

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28 Citations (Scopus)

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On Evidence Capture for Accountable AI Systems

Pang, W., Markovic, M., Naja, I., Pang Fung, C. & Edwards, P., 2 Jul 2021, CEUR Workshop Proceedings. Martin, K., Wiratunga , N. & Wijekoon, A. (eds.). Vol. 2894. p. 33-39 7 p. 169872

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Towards Accountability Driven Development for Machine Learning Systems

Pang Fung, C., Pang, W., Naja, I., Markovic, M. & Edwards, P., 2 Jul 2021, CEUR Workshop Proceedings: Proceedings of the SICSA eXplainable Artifical Intelligence Workshop 2021. Martin, K., Wiratunga , N. & Wijekoon, A. (eds.). Vol. 2894. p. 25-32 8 p.

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Unaddressed challenges in persuasive dieting chatbots

Balloccu, S., Reiter, E., Collu, M. G., Sanna, F., Sanguinetti, M. & Atzori, M., 22 Jun 2021, UMAP '21: Adjunct Proceedings of the 29th ACM Conference on User Modeling, Adaptation and Personalization. Association for Computing Machinery (ACM), p. 392-395 4 p.

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5 Citations (Scopus)

A Semantic Framework to Support AI System Accountability and Audit

Naja, I., Markovic, M., Edwards, P. & Cottrill, C., 6 Jun 2021, The Semantic Web. ESWC 2021. Lecture Notes in Computer Science. Springer Nature Switzerland AG, Vol. 12731. p. 160-176 17 p.

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16 Citations (Scopus)

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Safety in the Field: Assessing the Impact of Stress and Fatigue on Situation Awareness in Irish and British Farmers

Tone, I.-R. & Irwin, A., Jun 2021, Proceedings of the 21st Congress of the International Ergonomics Association (IEA 2021): Volume III - Sector Based Ergonomics. Black, N., Neumann, P. & Noy, I. (eds.). Vol. 3. p. 274-283 10 p.

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Quantification of Collagen IV in normal, potentially malignant and malignant lesions of the oropharynx: A pilot study

Clare, P., Nellany, K. & Abu-Eid, R. (Corresponding Author), 28 May 2021, (E-pub ahead of print) The 23rd International Conference on Control Systems and Computer Science: CSCS23-2021. IEEE Explore, p. 209-214 6 p. 65

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Pilot is a Pilot is a Pilot? Exploration of Effects of Professional Culture in Helicopter Pilots

Kaminska, A. (Corresponding Author), Irwin, A., Ray, D. & Flin, R., 18 May 2021, Proceedings of the 21st Congress of the International Ergonomics Association (IEA 2021): Volume III Sector Based Ergonomics. Black, N. L., Neumann, W. P. & Noy, I. (eds.). 1 ed. Cham, Switzerland: Springer , Vol. 3. p. 682-690 9 p. (Lecture Notes in Networks and Systems; vol. 221 LNNS).

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1 Citation (Scopus)

Deregulation of lipid composition in peri-tumoural adipose tissue in postmenopausal patients with breast cancer

Cheung, S. M., Mallikourti, V., Gagliardi, T., Husain, E., Masannat, Y., Heys, S. & He, J., 30 Apr 2021, Proceedings of the 2021 ISMRM & SMRT Annual Meeting & Exhibition. ISMRM, 0141. (Proceedings of the ISMRM & SMRT Annual Meeting & Exhibition).

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Open Access

A Systematic Review of Reproducibility Research in Natural Language Processing

Belz, A., Shimorina, A., Agarwal, S. & Reiter, E., 23 Apr 2021, Proceedings of the 16th Conference of the European Chapter of the Association for Computational Linguistics: Main Volume. ACL Anthology, p. 381-393 13 p.

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A preliminary study on evaluating Consultation Notes with Post-Editing

Moramarco, F., Savkov, A., Papadopoulos Korfiatis, A. & Reiter, E., 19 Apr 2021, Proceedings of the Workshop on Human Evaluation of NLP Systems (HumEval): EACL 2021. Belz, A., Agarwal, S., Graham, Y., Reiter, E. & Shimorina, A. (eds.). ACL, p. 62-68 7 p.

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Life Sciences & Medicine

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